Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
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2.5-5 by Jari Oksanen, 2 months ago
https://cran.r-project.org, https://github.com/vegandevs/vegan
Report a bug at https://github.com/vegandevs/vegan/issues
Browse source code at https://github.com/cran/vegan
Authors: Jari Oksanen , F. Guillaume Blanchet , Michael Friendly , Roeland Kindt , Pierre Legendre , Dan McGlinn , Peter R. Minchin , R. B. O'Hara , Gavin L. Simpson , Peter Solymos , M. Henry H. Stevens , Eduard Szoecs , Helene Wagner
Documentation: PDF Manual
Task views: Analysis of Ecological and Environmental Data, Multivariate Statistics, Phylogenetics, Especially Comparative Methods, Psychometric Models and Methods, Analysis of Spatial Data
GPL-2 license
Imports MASS, cluster, mgcv
Depends on permute, lattice
Suggests parallel, tcltk, knitr
Imported by Arothron, BAT, DarkDiv, Demerelate, DiversityOccupancy, GERGM, HMP, HTSSIP, HierDpart, INDperform, MEclustnet, NST, PCPS, PopGenReport, ProjectionBasedClustering, RRphylo, RVAideMemoire, RaceID, SYNCSA, SigTree, SparseLPM, adegenet, adespatial, bcRep, bingat, biogeo, cassandRa, codyn, dartR, dispRity, dynRB, ecospat, entropart, evolqg, forams, gdm, goeveg, grapherator, hagis, lefse, mcMST, memgene, metacoder, mirt, mixKernel, mobsim, netassoc, netcom, nodiv, paco, palaeoSig, patternize, pez, poppr, preText, rich, rioja, shapeR, sharpshootR, smartR, soundecology, spaceNet, spmoran, theseus, tnam, tspmeta, vcfR, vegclust, zetadiv, zooaRchGUI.
Depended on by BBI, BiodiversityR, CommEcol, CommunityCorrelogram, FD, FreeSortR, GUniFrac, KnowBR, MiSPU, RAM, analogue, bipartite, blender, cocorresp, collpcm, dave, easyCODA, ebimetagenomics, flowDiv, iDynoR, isopam, metacom, mpmcorrelogram, ordiBreadth, otuSummary, paleoMAS, picante, rareNMtests, recluster, simba, vegan3d.
Suggested by ALA4R, EcoGenetics, EcoIndR, GCalignR, Rraven, WeightedCluster, aptg, balance, bcp, betapart, bipartiteD3, codep, dimRed, divDyn, eHOF, ecolottery, ecospace, enveomics.R, epiphy, exprso, idar, liayson, loe, mefa, permute, phylotools, primer, propr, raptr, sads, shipunov, spaa, taxize, themetagenomics, vegdata, vegtable, yaImpute.
See at CRAN