Community Ecology Package

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.


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install.packages("vegan")

2.5-3 by Jari Oksanen, 3 months ago


https://cran.r-project.org, https://github.com/vegandevs/vegan


Report a bug at https://github.com/vegandevs/vegan/issues


Browse source code at https://github.com/cran/vegan


Authors: Jari Oksanen , F. Guillaume Blanchet , Michael Friendly , Roeland Kindt , Pierre Legendre , Dan McGlinn , Peter R. Minchin , R. B. O'Hara , Gavin L. Simpson , Peter Solymos , M. Henry H. Stevens , Eduard Szoecs , Helene Wagner


Documentation:   PDF Manual  


Task views: Analysis of Ecological and Environmental Data, Multivariate Statistics, Phylogenetics, Especially Comparative Methods, Psychometric Models and Methods, Analysis of Spatial Data


GPL-2 license


Imports MASS, cluster, mgcv

Depends on permute, lattice

Suggests parallel, tcltk, knitr


Imported by Arothron, BAT, Demerelate, DiversityOccupancy, GERGM, HMP, HTSSIP, INDperform, MEclustnet, PCPS, ProjectionBasedClustering, RVAideMemoire, RaceID, SYNCSA, SigTree, SparseLPM, adegenet, adespatial, bcRep, bingat, biogeo, cati, codyn, dispRity, dynRB, ecospat, entropart, evolqg, forams, gdm, goeveg, grapherator, lefse, mcMST, memgene, metacoder, mirt, mixKernel, mobsim, netassoc, netcom, nodiv, paco, patternize, pez, poppr, preText, rich, rioja, shapeR, sharpshootR, smartR, soundecology, spaceNet, spmoran, theseus, tnam, tspmeta, vcfR, vegclust, zetadiv, zooaRchGUI.

Depended on by BBI, BiodiversityR, CommEcol, CommunityCorrelogram, FD, FreeSortR, GUniFrac, KnowBR, MiSPU, RAM, analogue, betaper, bipartite, blender, cocorresp, collpcm, dave, easyCODA, ebimetagenomics, flowDiv, iDynoR, isopam, metacom, mpmcorrelogram, ordiBreadth, otuSummary, palaeoSig, paleoMAS, picante, rareNMtests, recluster, simba, vegan3d.

Suggested by ALA4R, EcoGenetics, EcoIndR, GCalignR, Rraven, WeightedCluster, aptg, bcp, betapart, codep, dimRed, divDyn, eHOF, ecolottery, ecospace, enveomics.R, epiphy, idar, liayson, loe, mefa, permute, phylotools, primer, propr, raptr, sads, spaa, taxize, themetagenomics, vegdata, vegtable, yaImpute.


See at CRAN