Microbial Community Ecology Data Analysis

A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity statistics, beta diversity statistics, differential abundance test and indicator taxon analysis, environmental data analysis, null model analysis, network analysis and functional analysis.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


0.3.3 by Chi Liu, 2 months ago

Browse source code at https://github.com/cran/microeco

Authors: Chi Liu [aut, cre, cph] , Minjie Yao [aut, cph] , Xiangzhen Li [aut] , Stilianos Louca [cph] , Nhu H. Nguyen [cph]

Documentation:   PDF Manual  

GPL-3 license

Imports R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr, tibble, scales, grid, ggplot2, RColorBrewer

Suggests reshape2, GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel, agricolae, gridExtra, picante, pheatmap, igraph, rgexf, tidytree, mice, ggtree, phyloseq

See at CRAN