Analysis of Plant Disease Epidemics

A toolbox to make it easy to analyze plant disease epidemics. It provides a common framework for plant disease intensity data recorded over time and/or space. Implemented statistical methods are currently mainly focused on spatial pattern analysis (e.g., aggregation indices, Taylor and binary power laws, distribution fitting, SADIE and mapcomp methods). See Madden LV, Hughes G, van den Bosch F (2007, ISBN: 978-089054-354-2) for further information on these methods. Several data sets that were mainly published in plant disease epidemiology literature are also included in this package.


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install.packages("epiphy")

0.3.4 by Christophe Gigot, 5 months ago


http://epiphy.org, https://github.com/chgigot/epiphy


Report a bug at https://github.com/chgigot/epiphy/issues


Browse source code at https://github.com/cran/epiphy


Authors: Christophe Gigot [aut, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports stats, methods, utils, grDevices, ggplot2, transport, msm, pbapply, Rcpp

Suggests magrittr, dplyr, tidyr, spdep, emdist, vegan, MASS, emdbook, knitr, rmarkdown

Linking to Rcpp


See at CRAN