Analysis of Plant Disease Epidemics

A toolbox to make it easy to analyze plant disease epidemics. It provides a common framework for plant disease intensity data recorded over time and/or space. Implemented statistical methods are currently mainly focused on spatial pattern analysis (e.g., aggregation indices, Taylor and binary power laws, distribution fitting, SADIE and mapcomp methods). See Madden LV, Hughes G, van den Bosch F (2007, ISBN: 978-089054-354-2) for further information on these methods. Several data sets that were mainly published in plant disease epidemiology literature are also included in this package.


Reference manual

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0.3.4 by Christophe Gigot, 5 months ago,

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Authors: Christophe Gigot [aut, cre]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports stats, methods, utils, grDevices, ggplot2, transport, msm, pbapply, Rcpp

Suggests magrittr, dplyr, tidyr, spdep, emdist, vegan, MASS, emdbook, knitr, rmarkdown

Linking to Rcpp

See at CRAN