Interactive Analysis of UCSC Xena Data

Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (<>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.


Reference manual

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1.0.0 by Shixiang Wang, a month ago

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Authors: Shixiang Wang [aut, cre] , Yi Xiong [aut] , Longfei Zhao [aut] , Kai Gu [aut] , Yin Li [aut] , Fei Zhao [aut]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports dplyr, ezcox, forcats, ggplot2, ggpubr, magrittr, ppcor, psych, purrr, shiny, stats, stringr, tibble, tidyr, UCSCXenaTools, utils

Suggests covr, cowplot, DT, furrr, future, ggrepel, ggstatsplot, knitr, pacman, plotly, plyr, RColorBrewer, rmarkdown, scales, survival, survminer, testthat

See at CRAN