Graph Theory Analysis of Brain MRI Data

A set of tools for performing graph theory analysis of brain MRI data. It is best suited to data from a Freesurfer analysis (cortical thickness, volumes, local gyrification index, surface area), but also works with e.g., tractography data from FSL and fMRI data from DPABI. It contains a graphical user interface for graph visualization and data exploration and several functions for generating useful figures.


Reference manual

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1.0.0 by Christopher G. Watson, 15 days ago

Report a bug at!forum/brainGraph-help

Browse source code at

Authors: Christopher G. Watson <>

Documentation:   PDF Manual  

GPL-3 license

Imports abind, ade4, boot, data.table, foreach, ggplot2, Hmisc, methods, oro.nifti, permute, parallel, plyr, RcppEigen, scales

Depends on igraph, RGtk2, cairoDevice

See at CRAN