Stan-Based Fit to Gastric Emptying Curves

Stan-based curve-fitting function for use with package 'breathtestcore' by the same author. Stan functions are refactored here for easier testing.


breathteststan: Bayesian fit to 13C Breath Test Time series for gastric emptying

Dieter Menne
Menne Biomed Consulting Tübingen, Germany
https://www.menne-biomed.de
[email protected]

grand-total last-release R build status Codecov test coverage

Dieter Menne Menne Biomed Consulting https://www.menne-biomed.de

[email protected]

Fit 13C time series data with Bayesian methods using Stan. This is an add-on to package breathtestcore. The Stan functions have been moved to this package to avoid long compile and test times.

breathtestshiny README

Reference manual

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install.packages("breathteststan")

0.8.9 by Dieter Menne, 2 years ago


https://github.com/dmenne/breathteststan, https://dmenne.github.io/breathteststan/


Report a bug at https://github.com/dmenne/breathteststan/issues


Browse source code at https://github.com/cran/breathteststan


Authors: Dieter Menne [aut, cre] , Menne Biomed Consulting Tuebingen [cph] , Benjamin Misselwitz [fnd] , Mark Fox [fnd] , University Hospital of Zurich , Dep. Gastroenterology [fnd, dtc]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports breathtestcore, dplyr, purrr, rstan, rstantools, stringr, tidyr

Depends on methods, Rcpp

Suggests ggplot2, shinystan, igraph, bayesplot, testthat, covr, knitr, parallelly, rmarkdown

Linking to BH, Rcpp, RcppEigen, rstan, StanHeaders

System requirements: GNU make


Suggested by breathtestcore.


See at CRAN