Pharmacometric and Pharmacokinetic Toolkit

Pharmacometric tools for common data analytical tasks; closed-form solutions for calculating concentrations at given times after dosing based on compartmental PK models (1-compartment, 2-compartment and 3-compartment, covering infusions, zero- and first-order absorption, and lag times, after single doses and at steady state, per Bertrand & Mentre (2008) < https://web.archive.org/web/20231002021707/https://www.facm.ucl.ac.be/cooperation/Vietnam/WBI-Vietnam-October-2011/Modelling/Monolix32_PKPD_library.pdf>); parametric simulation from NONMEM-generated parameter estimates and other output; and parsing, tabulating and plotting results generated by Perl-speaks-NONMEM (PsN).


pmxTools

Pharmacometric Tools for Modeling & Simulation

R-CMD-check contributions welcome Codecov test coverage

Developed by Justin Wilkins, Bill Denney and Rik Schoemaker, with contributions from a host of others.

Pharmacometric tools for common data analytical tasks; closed-form solutions for calculating concentrations at given times after dosing based on compartmental PK models (1-compartment, 2-compartment and 3-compartment, covering infusions, zero- and first-order absorption, and lag times, after single doses and at steady state, per Bertrand & Mentre (2008) https://web.archive.org/web/20231002021707/https://www.facm.ucl.ac.be/cooperation/Vietnam/WBI-Vietnam-October-2011/Modelling/Monolix32_PKPD_library.pdf); parametric simulation from NONMEM-generated parameter estimates and other output; and parsing, tabulating and plotting results generated by Perl-speaks-NONMEM (PsN).

To install the released version from CRAN:

install.packages("pmxTools")

or the development version from GitHub:

devtools::install_github("kestrel99/pmxTools")

Reference manual

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install.packages("pmxTools")

1.6 by Justin Wilkins, 9 days ago


https://github.com/kestrel99/pmxTools, https://kestrel99.github.io/pmxTools/


Report a bug at https://github.com/kestrel99/pmxTools/issues


Browse source code at https://github.com/cran/pmxTools


Authors: Justin Wilkins [aut, cre, cph] (ORCID: , Bill Denney [aut] , Rik Schoemaker [aut] , Satyaprakash Nayak [ctb] , Leonid Gibiansky [ctb] , Andrew Hooker [ctb] , E. Niclas Jonsson [ctb] , Mats O. Karlsson [ctb] , John Johnson [ctb]


Documentation:   PDF Manual  


GPL-2 license


Imports ggplot2, chron, xml2, dplyr, purrr, tibble, tidyr, ggdist, scales, MASS, stringr, PKNCA, magrittr, data.tree

Depends on patchwork

Suggests testthat, vdiffr, knitr, rmarkdown


Suggested by PKNCA, mrgsolve, rxode2.


See at CRAN