R We There Yet? Visualizing MCMC Convergence in Phylogenetics

Implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment.


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install.packages("rwty")

1.0.1 by Dan Warren, a year ago


Browse source code at https://github.com/cran/rwty


Authors: Dan Warren <dan.l.warren@gmail.com>, Anthony Geneva <anthony.geneva@gmail.com>, Rob Lanfear <rob.lanfear@gmail.com>


Documentation:   PDF Manual  


GPL-2 license


Imports reshape2, phangorn, coda, viridis, grid, plyr, ggdendro, GGally, parallel

Depends on ape, ggplot2

Suggests knitr


See at CRAN