R We There Yet? Visualizing MCMC Convergence in Phylogenetics

Implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


1.0.1 by Dan Warren, a year ago

Browse source code at https://github.com/cran/rwty

Authors: Dan Warren <dan.l.warren@gmail.com>, Anthony Geneva <anthony.geneva@gmail.com>, Rob Lanfear <rob.lanfear@gmail.com>

Documentation:   PDF Manual  

GPL-2 license

Imports reshape2, phangorn, coda, viridis, grid, plyr, ggdendro, GGally, parallel

Depends on ape, ggplot2

Suggests knitr

See at CRAN