Statistical Exploration of Landscapes of Phylogenetic Trees

Tools for the exploration of distributions of phylogenetic trees. This package includes a shiny interface which can be started from R using 'treespaceServer()'.


Reference manual

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1.0.0 by Thibaut Jombart, 8 months ago

Browse source code at

Authors: Thibaut Jombart [aut, cre], Michelle Kendall [aut], Jacob Almagro-Garcia [aut], Caroline Colijn [aut]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports adegenet, adegraphics, adephylo, combinat, compiler, distory, fields, htmlwidgets, MASS, phangorn, Rcpp, RLumShiny, scatterD3, shiny, shinyBS, utils

Depends on ape, ade4

Suggests igraph, RColorBrewer, ggplot2, testthat, knitr, rmarkdown, rgl

Linking to Rcpp

See at CRAN