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visNetwork

Network Visualization using 'vis.js' Library

Provides an R interface to the 'vis.js' JavaScript charting library. It allows an interactive visualization of networks.

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R package, using vis.js library for network visualization. visNetwork is now available on CRAN.

Online documentation

http://datastorm-open.github.io/visNetwork

And have a look to multiple R examples, vis.js documentation (visDocumentation).

News

2.0.4 available on CRAN

  • ### Update to fontAwesome 4.7.0
  • ### Fix node's id bug on collapse
  • ### Add main argument to selectedBy and nodesIdSelection
  • ### Add sparkline graphics in visTree
  • ### New visHclust for visualize Hierarchical cluster analysis
  • ### New visNetworkEditor and module visNetworkEditorUI to use visConfigure javascript functionnalities in R and shiny
  • ### Add zoom to visLegend
  • ### to vis.js 4.20.1
  • ### Add input$network_initialized
  • ### Add background to visNetwork
  • ### Fix visTreeEditor bug using rpart object
  • ### visTreeEditor : add complexity parameters
  • ### Fix layout control in visIgraph & visIgraphLayout
  • ### Add support for edges color/label using highlightNearest/selectedBy
  • ### New collapse features (?visOptions)
  • ### New proxy methods : visGetBoundingBox, visGetConnectedEdges, visGetConnectedNodes, visGetEdges, visGetNodes, visGetPositions, visGetScale, visGetSelectedEdges, visGetSelectedNodes, visGetSelection, visGetViewPosition
  • ### init visTree, to visualize rpart object, visTreeEditor and visTreeModuleServer

alt text

Example

install.packages("visNetwork")

# devtools::install_github("datastorm-open/visNetwork") for development version

require(visNetwork)
?visNetwork

# minimal example
nodes <- data.frame(id = 1:3)
edges <- data.frame(from = c(1,2), to = c(1,3))
visNetwork(nodes, edges)

# vignette
vignette("Introduction-to-visNetwork")

# full javascript documentation
visDocumentation()

# shiny example
shiny::runApp(system.file("shiny", package = "visNetwork"))

News

visNetwork 2.0.5

  • Fix clustering functions using level
  • add input$network_highlight_color_id and input$network_highlight_label_id
  • #266 : enabled custom manipulation
  • collapse : can keep coordinates and set label suffix
  • add sort argument to selectedBy
  • Fix passing icon using visGroup and proxy
  • Fix passing margin to nodes
  • Fix bug passing character to visTree
  • #290 : Fix legend using only one group

visNetwork 2.0.4

  • Update to fontAwesome 4.7.0
  • Fix node's id bug on collapse
  • add 'main' argument to 'selectedBy' and 'nodesIdSelection'
  • add sparkline graphics in visTree

visNetwork 2.0.3

  • Fix CRAN VIGNETTE BUILDER

visNetwork 2.0.2

  • New visHclust for visualize Hierarchical cluster analysis
  • New visNetworkEditor and module visNetworkEditorUI to use visConfigure javascript functionnalities in R and shiny
  • Add zoom to visLegend
  • to vis.js 4.20.1
  • Add input$network_initialized
  • Add background to visNetwork
  • Fix visTreeEditor bug using rpart object
  • visTreeEditor : add complexity parameters
  • Fix layout control in visIgraph & visIgraphLayout

visNetwork 2.0.0

  • add support for edges color/label using highlight/selectedBy
  • to vis.js 4.20.0
  • new proxy methods : visGetBoundingBox, visGetConnectedEdges, visGetConnectedNodes, visGetEdges, visGetNodes, visGetPositions, visGetScale, visGetSelectedEdges, visGetSelectedNodes, visGetSelection, visGetViewPosition
  • fix visOptions passing nodes as list rather data.frame
  • init visTree, to visualize rpart object

visNetwork 1.0.3

  • new hideColor argument to control hidden nodes & edges
  • add pdf export
  • enabled layout_with_sugiyama with visIgraphLayout
  • To vis.js 4.17.0
  • enabled passing nodes & edges as list
  • fix igraghLayout with rmarkdown and tabset
  • fix some bugs and add some options on legend
  • fix passing customScalingFunction using visGroups
  • fix reset options using unselectAll
  • add visNearestNodes function
  • store positions of nodes before rendering with visGetNodes
  • add delay on tooltip popup (so you can click on a link...!)

visNetwork 1.0.2

  • fix some bad interactions with dplyr & data.table
  • fix visSelect... & visRemove.. when passing only one id greater than 9
  • add updateOptions to visUpdateNodes & visRemoveNodes and fix update of options using this functions with proxy
  • add useLabels option for nodeIdSelection
  • Fix bad interaction with columns order & visIgraphLayout
  • add visGetNodes & visGetEdges to get data using shiny
  • add submain and footer argument
  • change export height estimation
  • Fix visInteraction bug using visOptions together
  • Fix passing dashes options + add example
  • Fix timevis bad interaction

visNetwork 1.0.1

  • New options for highlightNearest : can use hierarchical information
  • Add type argument to set listener once, or disabled it
  • Enabled visEvents with shiny/visNetworkProxy
  • Add some options for clustering & fix interactions with visOptions
  • Fix some bug in legend placement with some special case
  • New size control with visIgraphLayout
  • To vis.js 4.16.1

visNetwork 1.0.0

  • really lot of (good) changes in 0.2.2, so let's go to 1.0.0

visNetwork 0.2.2

  • fix / improve highlightNearest with high degree (can now have the entire sub-network)
  • can now set highlightNearest when hover a node, and also use another click / hover event
  • enabled highlightNearest with icons && image, and all combinaisons !
  • new visSelectNodes, visSelectEdges & visSetSelection to select data in shiny
  • add visSetOptions, to set many parameters in one time
  • add visMoveNode & visUnselectAll
  • enabled multiple groups selection
  • can now add a title to network & legend (main argument in visNetwork/visLegend function)
  • fix passing directly icon in nodes data.frame
  • add ionicons icons possibilities. See ?addIonicons
  • update font-awesome to 4.5.0
  • fix some bad interactions when highlightNearest/selectedBy/nodesIdSelection are set together, and using visUpdateNodes / visOptions with proxy
  • new visRemoveNodes & visRemoveEdges to remove data in shiny
  • new visUpdateNodes & visUpdateEdges to update data in shiny
  • enable visOptions with visNetworkProxy
  • add randomSeed to visIgraphLayout
  • add quick support for label.cex and label.color with visIgraph
  • to vis.js 4.15.0

visNetwork 0.2.1

  • can now passing "list" options directly with data.frame with specific notation
  • add visSave for html file, and visExport to save as png/jpeg (shiny or browser only)
  • fix some bad interactions when highlightNearest/selectedBy/nodesIdSelection are set together
  • fix selectedBy & highlightNearest redraw when nodes have coordinates
  • new function visIgraphLayout to compute coordinates using igraph, and render faster !
  • init new function visIgraph to plot visNetwork object from igraph object
  • adding new methods available for a use in shiny with visNetworkProxy : visSetData, visStabilize, visStartSimulation, visStopSimulation,visGetPositions
  • to vis.js 4.12.0 : new color option for shadows

visNetwork 0.2.0

  • introduce visNetworkProxy object for update & call method from shiny
  • fix bug placement for edges legend (sorry for that...!)
  • fix selectedBy with numeric values
  • introduce new options : can select initial value using 'selectedBy' and 'nodesIdSelection' (selected), set HTML style (style) and add subset on data (values)
  • introduce new shiny return when using manipulation = TRUE
  • to vis.js 4.11.0

visNetwork 0.1.2

  • new custom option : selectedBy, to add a selection on some nodes column
  • new option for highlightNearest : can now choose the degree of depth
  • to vis.js 4.9.0 Have a look to vis.js history !
  • fix visDocumentation for use RStudio and RStudio server viewer
  • new function visLegend for more custom legend on nodes and edges
  • use jsonlite rather rjson in case of gephi json file

visNetwork 0.1.1

  • add font-awesome icons possibilities. See ?addFontAwesome
  • fix multiple network resize bug in shiny
  • to vis.js 4.8.2. Have a look to vis.js history !

visNetwork 0.1.0

  • ready for CRAN submission

visNetwork 0.0.4

  • remove bootstrap dependance
  • move to vis.js 4.4.0 so, a lot of changes...
    • new visConfigure function
    • new visInteraction function
    • new visLayout function
    • remove visTooltip
    • move and rename argument as vis.js change...
    • initialize some clustering function....
    • ....

visNetwork 0.0.3

  • add shiny interaction when use nodesIdSelection

visNetwork 0.0.2

  • Move highlight.nearest argument from visNetwork to visOptions, and rename as highlightNearest
  • Move id.selection argument from visNetwork to visOptions, and rename as nodesIdSelection
  • Move legend.width argument to visNetwork

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.
install.packages("visNetwork")

2.0.5 by Benoit Thieurmel, 4 months ago

http://datastorm-open.github.io/visNetwork/

Report a bug at https://github.com/datastorm-open/visNetwork/issues

Browse source code at https://github.com/cran/visNetwork

Authors: Almende B.V. [aut, cph] (vis.js library in htmlwidgets/lib , http://visjs.org , http://www.almende.com/home) , Benoit Thieurmel [aut, cre] (R interface) , Titouan Robert [aut, ctb]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports htmlwidgets, htmltools, jsonlite, magrittr, utils, methods, grDevices, stats

Suggests knitr, rmarkdown, webshot, igraph, rpart, shiny, shinyWidgets, colourpicker, sparkline, ggraph, flashClust

Imported by CNVScope, CoDiNA, DiagrammeR, MXM, PriorCD, RcextTools, RedditExtractoR, ShinyTester, ahnr, arulesViz, bnviewer, cranly, epicontacts, epiflows, genBaRcode, iDINGO, linkspotter, outbreaker2, petrinetR, pkgnet, rmake, teachingApps, vennLasso, wTO, wiseR.

Suggested by HelpersMG, analysisPipelines, antaresViz, drake, lava, plumber.

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