Robust Empirical Bayes Confidence Intervals

Computes empirical Bayes confidence estimators and confidence intervals in a normal means model. The intervals are robust in the sense that they achieve correct coverage regardless of the distribution of the means. If the means are treated as fixed, the intervals have an average coverage guarantee. The implementation is based on Armstrong, Kolesár and Plagborg-Møller (2020) .

Scalable Bayes with Median of Subset Posteriors

Median-of-means is a generic yet powerful framework for scalable and robust estimation. A framework for Bayesian analysis is called M-posterior, which estimates a median of subset posterior measures. For general exposition to the topic, see the paper by Minsker (2015) .

Plausible Naive Bayes Classifier Using PDE

A nonparametric, multicore-capable plausible naive Bayes classifier based on the Pareto density estimation (PDE) featuring a plausible approach to a pitfall in the Bayesian theorem covering low evidence cases. Stier, Q., Hoffmann, J., and Thrun, M.C.: "Classifying with the Fine Structure of Distributions: Leveraging Distributional Information for Robust and Plausible Naive Bayes" (2026), Machine Learning and Knowledge Extraction (MAKE), .

Empirical Bayes Estimation of Dynamic Bayesian Networks

Infer the adjacency matrix of a network from time course data using an empirical Bayes estimation procedure based on Dynamic Bayesian Networks.

Computation of Bayes Factors for Common Biomedical Designs

BAYesian inference for MEDical designs in R. Functions for the computation of Bayes factors for common biomedical research designs. Implemented are functions to test the equivalence (equiv_bf), non-inferiority (infer_bf), and superiority (super_bf) of an experimental group compared to a control group on a continuous outcome measure. Bayes factors for these three tests can be computed based on raw data (x, y) or summary statistics (n_x, n_y, mean_x, mean_y, sd_x, sd_y [or ci_margin and ci_level]).

Interactive Document for Working with Naive Bayes Classification

An interactive document on the topic of naive Bayes classification analysis using 'rmarkdown' and 'shiny' packages. Runtime examples are provided in the package function as well as at < https://kartikeyab.shinyapps.io/NBShiny/>.

Interactive Document for Working with Naive Bayes Classification

An interactive document on the topic of naive Bayes classification analysis using 'rmarkdown' and 'shiny' packages. Runtime examples are provided in the package function as well as at < https://kartikeyab.shinyapps.io/NBShiny/>.

Interactive Document for Working with Naive Bayes Classification

An interactive document on the topic of naive Bayes classification analysis using 'rmarkdown' and 'shiny' packages. Runtime examples are provided in the package function as well as at < https://kartikeyab.shinyapps.io/NBShiny/>.

Empirical Bayes Multi-State Cox Model

Implements an empirical Bayes, multi-state Cox model for survival analysis. Run "?'ebmstate-package'" for details. See also Schall (1991) .

Variational Bayes for Latent Patient Phenotypes in EHR

Identification of Latent Patient Phenotype from Electronic Health Records (EHR) Data using Variational Bayes Gaussian Mixture Model for Latent Class Analysis and Variational Bayes regression for Biomarker level shifts, both implemented by Coordinate Ascent Variational Inference algorithms. Variational methods are used to enable Bayesian analysis of very large Electronic Health Records data. For VB GMM details see Bishop (2006,ISBN:9780-387-31073-2). For Logistic VB see Jaakkola and Jordan (2000) . Please see preprint of JSS-submitted paper .