Send Email Messages

A light, simple tool for sending emails with minimal dependencies.

Find, Characterize, and Explore Extreme Events in Climate Projections

Inputs a directory of climate projection files and, for each, identifies and characterizes heat waves for specified study locations. The definition used to identify heat waves can be customized. Heat wave characterizations include several metrics of heat wave length, intensity, and timing in the year. The heat waves that are identified can be explored using a function to apply user-created functions across all generated heat wave files.This work was supported in part by grants from the National Institute of Environmental Health Sciences (R00ES022631), the National Science Foundation (1331399), and the Colorado State University Vice President for Research.

'Drat' R Archive Template

Creation and use of R Repositories via helper functions to insert packages into a repository, and to add repository information to the current R session. Two primary types of repositories are support: gh-pages at GitHub, as well as local repositories on either the same machine or a local network. Drat is a recursive acronym: Drat R Archive Template.

Get XKCD Comic Data

Download data from individual XKCD comics, written by Randall Munroe < https://xkcd.com/>.

Spatial Temporal Analysis of Moving Polygons

Perform spatial temporal analysis of moving polygons; a longstanding analysis problem in Geographic Information Systems. Facilitates directional analysis, distance analysis, and some other simple functionality for examining spatial-temporal patterns of moving polygons.

Weighted Portmanteau Tests for Time Series Goodness-of-Fit

An implementation of the Weighted Portmanteau Tests described in "New Weighted Portmanteau Statistics for Time Series Goodness-of-Fit Testing" published by the Journal of the American Statistical Association, Volume 107, Issue 498, pages 777-787, 2012.

Parsing Expression Grammars in Rcpp

A wrapper around the 'Parsing Expression Grammar Template Library', a C++11 library for generating Parsing Expression Grammars, that makes it accessible within Rcpp. With this, developers can implement their own grammars and easily expose them in R packages.

Gradient Boosting for Generalized Additive Mixed Models

Provides a novel framework to estimate mixed models via gradient boosting. The implemented functions are based on the 'mboost' and 'lme4' packages, and the family range is therefore determined by 'lme4'. A correction mechanism for cluster-constant covariates is implemented, as well as estimation of the covariance of random effects. These methods are described in the accompanying publication; see for details.

Overdispersion in Count Data Multiple Regression Analysis

Detection of overdispersion in count data for multiple regression analysis. Log-linear count data regression is one of the most popular techniques for predictive modeling where there is a non-negative discrete quantitative dependent variable. In order to ensure the inferences from the use of count data models are appropriate, researchers may choose between the estimation of a Poisson model and a negative binomial model, and the correct decision for prediction from a count data estimation is directly linked to the existence of overdispersion of the dependent variable, conditional to the explanatory variables. Based on the studies of Cameron and Trivedi (1990) and Cameron and Trivedi (2013, ISBN:978-1107667273), the overdisp() command is a contribution to researchers, providing a fast and secure solution for the detection of overdispersion in count data. Another advantage is that the installation of other packages is unnecessary, since the command runs in the basic R language.

Spectral Modularity Clustering

Implements the network clustering algorithm described in Newman (2006) . The complete iterative algorithm comprises of two steps. In the first step, the network is expressed in terms of its leading eigenvalue and eigenvector and recursively partition into two communities. Partitioning occurs if the maximum positive eigenvalue is greater than the tolerance (10e-5) for the current partition, and if it results in a positive contribution to the Modularity. Given an initial separation using the leading eigen step, 'rSpectral' then continues to maximise for the change in Modularity using a fine-tuning step - or variate thereof. The first stage here is to find the node which, when moved from one community to another, gives the maximum change in Modularity. This node’s community is then fixed and we repeat the process until all nodes have been moved. The whole process is repeated from this new state until the change in the Modularity, between the new and old state, is less than the predefined tolerance. A slight variant of the fine-tuning step, which can improve speed of the calculation, is also provided. Instead of moving each node into each community in turn, we only consider moves of neighbouring nodes, found in different communities, to the community of the current node of interest. The two steps process is repeatedly applied to each new community found, subdivided each community into two new communities, until we are unable to find any division that results in a positive change in Modularity.