Visualization and Imputation of Missing Values

Provides methods for imputation and visualization of missing values. It includes graphical tools to explore the amount, structure and patterns of missing and/or imputed values, supporting exploratory data analysis and helping to investigate potential missingness mechanisms (details in Alfons, Templ and Filzmoser, . The quality of imputations can be assessed visually using a wide range of univariate, bivariate and multivariate plots. The package further provides several imputation methods, including efficient implementations of k-nearest neighbour and hot-deck imputation (Kowarik and Templ 2013, , iterative robust model-based multiple imputation (Templ 2011, ; Templ 2023, ), and machine learning–based approaches such as robust GAM-based multiple imputation (Templ 2024, ) as well as gradient boosting (XGBoost) and transformer-based methods (Niederhametner et al., ). General background and practical guidance on imputation are provided in the Springer book by Templ (2023) .

R Unit Test Framework

R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools.

Estimation of Indicators on Social Exclusion and Poverty

Estimation of indicators on social exclusion and poverty, as well as Pareto tail modeling for empirical income distributions.

Display and Analyze ROC Curves

Tools for visualizing, smoothing and comparing receiver operating characteristic (ROC curves). (Partial) area under the curve (AUC) can be compared with statistical tests based on U-statistics or bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.

Pan-European Phenological Data Analysis

Provides a framework for quality-aware analysis of ground-based phenological data from the PEP725 Pan-European Phenology Database (Templ et al. (2018) ; Templ et al. (2026) ) and similar observation networks. Implements station-level data quality grading, outlier detection, phenological normals (climate baselines), anomaly detection, elevation and latitude gradient estimation with robust regression, spatial synchrony quantification, partial least squares (PLS) regression for identifying temperature-sensitive periods, and sequential Mann-Kendall trend analysis. Supports data import from PEP725 files, conversion of user-supplied data, and downloadable synthetic datasets for teaching without barriers of registration. All analysis outputs provide 'print', 'summary', and 'plot' methods. Interactive spatial visualization is available via 'leaflet'.

Extensions of Package 'distr'

Extends package 'distr' by functionals, distances, and conditional distributions.

Correction of Heaping on Individual Level

Provides methods for correcting heaping (digit preference) in survey data at the individual record level. Age heaping, where respondents disproportionately report ages ending in 0 or 5, is a common phenomenon that can distort demographic analyses. Unlike traditional smoothing methods that only correct aggregated statistics, this package corrects individual values by replacing a calculated proportion of heaped observations with draws from fitted truncated distributions (log-normal, normal, or uniform). Supports 5-year and 10-year heaping patterns, single heap correction, and optional model-based adjustment to preserve covariate relationships.

Various Coefficients of Interrater Reliability and Agreement

Coefficients of Interrater Reliability and Agreement for quantitative, ordinal and nominal data: ICC, Finn-Coefficient, Robinson's A, Kendall's W, Cohen's Kappa, ...

Compositional Data Analysis

Methods for analysis of compositional data including robust methods (), imputation of missing values (), methods to replace rounded zeros (, , ), count zeros (), methods to deal with essential zeros (), (robust) outlier detection for compositional data, (robust) principal component analysis for compositional data, (robust) factor analysis for compositional data, (robust) discriminant analysis for compositional data (Fisher rule), robust regression with compositional predictors, functional data analysis () and p-splines (), contingency () and compositional tables (, , ) and (robust) Anderson-Darling normality tests for compositional data as well as popular log-ratio transformations (addLR, cenLR, isomLR, and their inverse transformations). In addition, visualisation and diagnostic tools are implemented as well as high and low-level plot functions for the ternary diagram.

Clustering of Weighted Data

Clusters state sequences and weighted data. It provides an optimized weighted PAM algorithm as well as functions for aggregating replicated cases, computing cluster quality measures for a range of clustering solutions, sequence analysis typology validation using parametric bootstraps and plotting (fuzzy) clusters of state sequences. It further provides a fuzzy and crisp CLARA algorithm to cluster large database with sequence analysis, and a methodological framework for Robustness Assessment of Regressions using Cluster Analysis Typologies (RARCAT).