Examples: visualization, C++, networks, data cleaning, html widgets, ropensci.

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epiR — by Mark Stevenson, 5 months ago

Tools for the Analysis of Epidemiological Data

Tools for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.

lvec — by Jan van der Laan, a year ago

Out of Memory Vectors

Core functionality for working with vectors (numeric, integer, logical and character) that are too large to keep in memory. The vectors are kept (partially) on disk using memory mapping. This package contains the basic functionality for working with these memory mapped vectors (e.g. creating, indexing, ordering and sorting) and provides C++ headers which can be used by other packages to extend the functionality provided in this package.

ffbase — by Edwin de Jonge, 5 months ago

Basic Statistical Functions for Package 'ff'

Extends the out of memory vectors of 'ff' with statistical functions and other utilities to ease their usage.

CorrMixed — by Wim Van der Elst, 3 years ago

Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models

In clinical practice and research settings in medicine and the behavioral sciences, it is often of interest to quantify the correlation of a continuous endpoint that was repeatedly measured (e.g., test-retest correlations, ICC, etc.). This package allows for estimating these correlations based on mixed-effects models. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.

RMark — by Jeff Laake, 2 months ago

R Code for Mark Analysis

An interface to the software package MARK that constructs input files for MARK and extracts the output. MARK was developed by Gary White and is freely available at < http://www.phidot.org/software/mark/downloads/> but is not open source.

cmm — by L. A. van der Ark, a year ago

Categorical Marginal Models

Quite extensive package for maximum likelihood estimation and weighted least squares estimation of categorical marginal models (CMMs; e.g., Bergsma and Rudas, 2002, < http://www.jstor.org/stable/2700006?; Bergsma, Croon and Hagenaars, 2009, .

bigQueryR — by Mark Edmondson, 10 months ago

Interface with Google BigQuery with Shiny Compatibility

Interface with 'Google BigQuery', see < https://cloud.google.com/bigquery/> for more information. This package uses 'googleAuthR' so is compatible with similar packages, including 'Google Cloud Storage' (< https://cloud.google.com/storage/>) for result extracts.

calibrate — by Jan Graffelman, 6 years ago

Calibration of Scatterplot and Biplot Axes

Package for drawing calibrated scales with tick marks on (non-orthogonal) variable vectors in scatterplots and biplots.

RNifti — by Jon Clayden, 6 months ago

Fast R and C++ Access to NIfTI Images

Provides very fast read and write access to images stored in the NIfTI-1 and ANALYZE-7.5 formats, with seamless synchronisation between compiled C and interpreted R code. Also provides a C/C++ API that can be used by other packages. Not to be confused with 'RNiftyReg', which performs image registration.

mrds — by Laura Marshall, 10 months ago

Mark-Recapture Distance Sampling

Animal abundance estimation via conventional, multiple covariate and mark-recapture distance sampling (CDS/MCDS/MRDS). Detection function fitting is performed via maximum likelihood. Also included are diagnostics and plotting for fitted detection functions. Abundance estimation is via a Horvitz-Thompson-like estimator.