Hyperlink Automatic Detection

Automatic detection of hyperlinks for packages and calls in the text of 'rmarkdown' or 'quarto' documents.

Simplified Error Handling

Alternative to using withCallingHandlers() in the simple case of catch and rethrow. The `%!%` operator evaluates the expression on its left hand side, and if an error occurs, the right hand side is used to construct a new error that embeds the original error.

A Simple HTTP Server to Serve Static Files or Dynamic Documents

Start an HTTP server in R to serve static files, or dynamic documents that can be converted to HTML files (e.g., R Markdown) under a given directory.

R and C++11

Rcpp11 includes a header only C++11 library that facilitates integration between R and modern C++.

Geometries to Plot Networks with 'ggplot2'

Geometries to plot network objects with 'ggplot2'.

Extensions for 'Flextable'

Build display tables easily by extending the functionality of the 'flextable' package. Features include spanning header, grouping rows, parsing markdown and so on.

Create 'Ascii' Screen Casts from R Scripts

Record 'asciicast' screen casts from R scripts. Convert them to animated SVG images, to be used in 'README' files, or blog posts. Includes 'asciinema-player' as an 'HTML' widget, and an 'asciicast' 'knitr' engine, to embed 'ascii' screen casts in 'Rmarkdown' documents.

A Toolbox for Manipulating Biological Sequences

Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences). Implements S3 infrastructure to work with biological sequences as described in Keck (2020) . Provides a collection of functions to perform biological conversion among classes (transcription, translation) and basic operations on sequences (detection, selection and replacement based on positions or patterns). The package also provides functions to import and export sequences from and to other package formats.

An Interface to the Nexus Class Library

An interface to the Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. It provides elements of the file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.

R Graphics Devices for 'Office' Vector Graphics Output

Vector Graphics devices for 'Microsoft PowerPoint' and 'Microsoft Excel'. Functions extending package 'officer' are provided to embed 'DrawingML' graphics into 'Microsoft PowerPoint' presentations and 'Microsoft Excel' workbooks.